Publications en collaboration avec l'équipe BIBS

2024

Joshi G, Décembre E, Brocard J, Montpellier C, Ferrié M, Allatif O, Mehnert A-K, Pons J, Galiana D, Thi VLD, et al.: Hepatitis E Virus-induced antiviral response by plasmacytoid dendritic cells is modulated by the ORF2 protein [Internet]. 2024, BioRxiv doi:10.1101/2024.04.12.589258. [doi: 10.1101/2024.04.12.589258]

Cosson C, Riou R, Patoli D, Niu T, Rey A, Groslambert M, De Rosny C, Chatre E, Allatif O, Henry T, et al.: Functional diversity of NLRP3 gain-of-function mutants associated with CAPS autoinflammation. J Exp Med 2024, 221:e20231200. [doi: 10.1084/jem.20231200] [PMID: 38530241] [PMCID: PMC10966137]

Louvat C, Deymier S, Nguyen X-N, Labaronne E, Noy K, Cariou M, Corbin A, Mateo M, Ricci EP, Fiorini F, et al.: Stable structures or PABP1 loading protects cellular and viral RNAs against ISG20-mediated decay. Life Sci Alliance 2024, 7:e202302233. [doi: 10.26508/lsa.202302233] [PMID: 38418089] [PMCID: PMC10902665]

Mercier BC, Labaronne E, Cluet D, Guiguettaz L, Fontrodona N, Bicknell A, Corbin A, Wencker M, Aube F, Modolo L, et al.: Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation. Genome Res 2024, 34:394–409. [doi: 10.1101/gr.277863.123] [PMID: 38508694] [PMCID: PMC11067875]

2023

Guibert N, Trepat K, Pozzetto B, Josset L, Fassier J-B, Allatif O, Saker K, Brengel-Pesce K, Walzer T, Vanhems P, et al.: A third vaccine dose equalises the levels of effectiveness and immunogenicity of heterologous or homologous COVID-19 vaccine regimens, Lyon, France, December 2021 to March 2022. Euro Surveill 2023, 28:2200746. [doi: 10.2807/1560-7917.ES.2023.28.15.2200746] [PMID: 37052679] [PMCID: PMC10103547]

Barateau V, Peyrot L, Saade C, Pozzetto B, Brengel-Pesce K, Elsensohn M-H, Allatif O, Guibert N, Compagnon C, Mariano N, et al.: Prior SARS-CoV-2 infection enhances and reshapes spike protein-specific memory induced by vaccination. Sci Transl Med 2023, 15:eade0550. [doi: 10.1126/scitranslmed.ade0550] [PMID: 36921035]

Venet M, Ribeiro MS, Décembre E, Bellomo A, Joshi G, Nuovo C, Villard M, Cluet D, Perret M, Pescamona R,, Paidassi H, Walzer T, Allatif O, et al.: Severe COVID-19 patients have impaired plasmacytoid dendritic cell-mediated control of SARS-CoV-2. Nat Commun 2023, 14:694. [doi: 10.1038/s41467-023-36140-9] [PMID: 36755036] [PMCID: PMC9907212]

2022

Cariou M, Picard L, Guéguen L, Jacquet S, Cimarelli A, Fregoso OI, Molaro A, Navratil V, Etienne L: Distinct evolutionary trajectories of SARS-CoV-2-interacting proteins in bats and primates identify important host determinants of COVID-19. Proc Natl Acad Sci U S A 2022, 119:e2206610119. [doi: 10.1073/pnas.2206610119] [PMID: 35947637] [PMCID: PMC9436378]

Condé L, Allatif O, Ohlmann T, de Breyne S: Translation of SARS-CoV-2 gRNA Is Extremely Efficient and Competitive despite a High Degree of Secondary Structures and the Presence of an uORF. Viruses 2022, 14:1505. [doi: 10.3390/v14071505] [PMID: 35891485] [PMCID: PMC9322171]

Rocca Y, Pouxvielh K, Marotel M, Benezech S, Jaeger B, Allatif O, Bendriss-Vermare N, Marçais A, Walzer T: Combinatorial Expression of NK Cell Receptors Governs Cell Subset Reactivity and Effector Functions but Not Tumor Specificity. J Immunol 2022, 208:1802–1812. [doi: 10.4049/jimmunol.2100874] [PMID: 35288470]

2021

Pozzetto B, Legros V, Djebali S, Barateau V, Guibert N, Villard M, Peyrot L, Allatif O, Fassier J-B, Massardier-Pilonchéry A, et al.: Immunogenicity and efficacy of          heterologous ChAdOx1-BNT162b2 vaccination. Nature 2021, 600:701–706. [doi: 10.1038/s41586-021-04120-y] [PMID: 34673755]

Rocamonde B, Futsch N, Orii N, Allatif O, Penalva de Oliveira AC, Mahieux R, Casseb J, Dutartre H: Immunoprofiling of fresh HAM/TSP blood samples shows altered innate cell responsiveness. PLoS Negl Trop Dis 2021, 15:e0009940. [doi: 10.1371/journal.pntd.0009940] [PMID: 34767551] [PMCID: PMC8631667]

Moreews M, Le Gouge K, Khaldi-Plassart S, Pescarmona R, Mathieu A-L, Malcus C, Djebali S, Bellomo A, Dauwalder O, Perret M, Villard M, Chopin E, Rouvet I, Vandenesh F, Dupieux C, Pouyau R, Teyssedre S, Guerder M, Louazon T, Moulin-Zinsch A, Duperril M, Patural H, Giovannini-Chami L, Portefaix A, Kassai B, Venet F, Monneret G, Lombard C, Flodrops H, De Guillebon J-M, Bajolle F, Launay V, Bastard P, Zhang S-Y, Dubois V, Thaunat O, Richard J-C, Mezidi M, Allatif O, et al.: Polyclonal expansion of TCR Vbeta 21.3+ CD4+ and CD8+ T cells is a hallmark of Multisystem Inflammatory Syndrome in Children. Sci Immunol 2021, 6:eabh1516. [doi: 10.1126/sciimmunol.abh1516] [PMID: 34035116] [PMCID: PMC8815705]

Villani AP, Rozieres A, Bensaid B, Eriksson KK, Mosnier A, Albert F, Mutez V, Brassard O, Baysal T, Tardieu M, Allatif O, et al.: Massive clonal expansion of polycytotoxic skin and blood CD8+ T cells in patients with toxic epidermal necrolysis. Sci Adv 2021, 7:eabe0013. [doi: 10.1126/sciadv.abe0013] [PMID: 33741590] [PMCID: PMC7978430]

Legros V, Denolly S, Vogrig M, Boson B, Siret E, Rigaill J, Pillet S, Grattard F, Gonzalo S, Verhoeven P, Allatif O, et al.: A longitudinal study of SARS-CoV-2-infected patients reveals a high correlation between neutralizing antibodies and COVID-19 severity. Cell Mol Immunol 2021, 18:318–327. [doi: 10.1038/s41423-020-00588-2] [PMID: 33408342] [PMCID: PMC7786875]

Marotel M, Villard M, Drouillard A, Tout I, Besson L, Allatif O, Pujol M, Rocca Y, Ainouze M, Roblot G, et al.: Peripheral natural killer cells in chronic hepatitis B patients display multiple molecular features of T cell exhaustion. Elife 2021, 10:e60095. [doi: 10.7554/eLife.60095] [PMID: 33507150] [PMCID: PMC7870135]

2020

Picard L, Ganivet Q, Allatif O, Cimarelli A, Guéguen L, Etienne L: DGINN, an automated and highly-flexible pipeline for the detection of genetic innovations on protein-coding genes. Nucleic Acids Res 2020, 48:e103. [doi: 10.1093/nar/gkaa680] [PMID: 32941639] [PMCID: PMC7544217]

2019

Benaoudia S, Martin A, Puig Gamez M, Gay G, Lagrange B, Cornut M, Krasnykov K, Claude J-B, Bourgeois CF, Hughes S, Gillet B, Allatif O, Corbin A, et al.: A genome-wide screen identifies IRF2 as a key regulator of caspase-4 in human cells. EMBO Rep 2019, 20:e48235. [doi: 10.15252/embr.201948235] [PMID: 31353801] [PMCID: PMC6727027]

Welsch JC, Charvet B, Dussurgey S, Allatif O, Aurine N, Horvat B, Gerlier D, Mathieu C: Type I Interferon Receptor Signaling Drives Selective Permissiveness of Astrocytes and Microglia to Measles Virus during Brain Infection. J Virol 2019, 93:e00618-19. [doi: 10.1128/JVI.00618-19] [PMID: 31019048] [PMCID: PMC6580971]

Assil S, Coléon S, Dong C, Décembre E, Sherry L, Allatif O, Webster B, Dreux M: Plasmacytoid Dendritic Cells and Infected Cells Form an Interferogenic Synapse Required for Antiviral Responses. Cell Host Microbe 2019, 25:730-745.e6. [doi: 10.1016/j.chom.2019.03.005] [PMID: 31003939]

Mangeot PE, Risson V, Fusil F, Marnef A, Laurent E, Blin J, Mournetas V, Massouridès E, Sohier TJM, Corbin A, et al.: Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins. Nat Commun 2019, 10:45. [doi: 10.1038/s41467-018-07845-z] [PMID: 30604748] [PMCID: PMC6318322]

2018

Mure F, Corbin A, Benbahouche NEH, Bertrand E, Manet E, Gruffat H: The splicing factor SRSF3 is functionally connected to the nuclear RNA exosome for intronless mRNA decay. Sci Rep 2018, 8:12901. [doi: 10.1038/s41598-018-31078-1] [PMID: 30150655] [PMCID: PMC6110769]

Pérès E, Blin J, Ricci EP, Artesi M, Hahaut V, Broeke AV den, Corbin A, Gazzolo L, Ratner L, Jalinot P, et al.: PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice. PLOS Pathogens 2018, 14:e1006933. [doi: 10.1371/journal.ppat.1006933]

Jamilloux Y, Lefeuvre L, Magnotti F, Martin A, Benezech S, Allatif O, Penel-Page M, Hentgen V, Sève P, Gerfaud-Valentin M, et al.: Familial Mediterranean fever mutations are hypermorphic mutations that specifically decrease the activation threshold of the Pyrin inflammasome. Rheumatology (Oxford) 2018, 57:100–111. [doi: 10.1093/rheumatology/kex373] [PMID: 29040788]

Besson L, Charrier E, Karlin L, Allatif O, Marçais A, Rouzaire P, Belmont L, Attal M, Lombard C, Salles G, et al.: One-Year Follow-Up of Natural Killer Cell Activity in Multiple Myeloma Patients Treated With Adjuvant Lenalidomide Therapy. Front Immunol 2018, 9:704. [doi: 10.3389/fimmu.2018.00704] [PMID: 29706958] [PMCID: PMC5908898]

2017

Panthu B, Terrier O, Carron C, Traversier A, Corbin A, Balvay L, Lina B, Rosa-Calatrava M, Ohlmann T: The NS1 Protein from Influenza Virus Stimulates Translation Initiation by Enhancing Ribosome Recruitment to mRNAs. J. Mol. Biol. 2017, 429:3334–3352. [doi: 10.1016/j.jmb.2017.04.007] [PMID: 28433538]

Wallet P, Benaoudia S, Mosnier A, Lagrange B, Martin A, Lindgren H, Golovliov I, Michal F, Basso P, Djebali S, Provost A, Allatif O, et al.: IFN-γ extends the immune functions of Guanylate Binding Proteins to inflammasome-independent antibacterial activities during Francisella novicida infection. PLoS Pathog 2017, 13:e1006630. [doi: 10.1371/journal.ppat.1006630] [PMID: 28968459] [PMCID: PMC5624647]

Marçais A, Marotel M, Degouve S, Koenig A, Fauteux-Daniel S, Drouillard A, Schlums H, Viel S, Besson L, Allatif O, et al.: High mTOR activity is a hallmark of reactive natural killer cells and amplifies early signaling through activating receptors. Elife 2017, 6:e26423. [doi: 10.7554/eLife.26423] [PMID: 28875936] [PMCID: PMC5628014]

Jean A, Tardy F, Allatif O, Grosjean I, Blanquier B, Gerlier D: Assessing mycoplasma contamination of cell cultures by qPCR using a set of universal primer pairs targeting a 1.5 kb fragment of 16S rRNA genes. PLoS One 2017, 12:e0172358. [doi: 10.1371/journal.pone.0172358] [PMID: 28225826] [PMCID: PMC5321415]

2016

Attaiech L, Boughammoura A, Brochier-Armanet C, Allatif O, Peillard-Fiorente F, Edwards RA, Omar AR, MacMillan AM, Glover M, Charpentier X: Silencing of natural transformation by an RNA chaperone and a multitarget small RNA. Proc Natl Acad Sci U S A 2016, 113:8813–8818. [doi: 10.1073/pnas.1601626113] [PMID: 27432973] [PMCID: PMC4978251]

Philippe C, Vargas-Landin DB, Doucet AJ, Essen D van, Vera-Otarola J, Kuciak M, Corbin A, Nigumann P, Cristofari G: Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci. eLife Sciences 2016, 5:e13926. [doi: 10.7554/eLife.13926]